Version 1.2.2

Version 1.2.2 - Release notes - 2019-10-13

Implementation changes

• Correction of findBe() result display
• Correction of bug in getBeIds() and getRelevantIds()
• Implement BEIDList class
• cleanDubiousXRef() function applied to NCBI gene cross-references
  from Ensembl
• Improving mapping function for supporting difficult history
  of Zebrafish Ensembl identifiers

Rebuild-BED.Rmd

• Based on neo4j-community-3.5.11
• Ensembl 98
• Add Danio rerio (zebrafish) support
• Because of a few (a very small number but quite annoying) dubious mapping
  with EntrezGene identifier, only unambigous mapping from Ensembl have been
  conserved. Relevant ambigous mapping be rescued by mapping from the NCBI
  and to other reference database such as HGNC, MGI or RGD.
  The cleanDubiousXRef() has been updated to this end
  Examples:
  • https://www.ensembl.org/Homo_sapiens/Gene/Matches?g=ENSG00000120088