multi-fasta-split

This repository contains a Bash script to split a MultiFasta file into individual fasta files. It also includes a variant that can be run using SLURM for HPC environments. Unlike other options currently available on GitHub, this script is 100% in Bash, making it more portable and more easily integrated within a HPC cluster framework.

Features

• Splits a MultiFasta file into individual fasta files in a given directory.
• Enables proper argument handling for reproducibility purposes.
• Provides a SLURM-compatible script for batch processing.

Local Execution

./split_fasta.sh -i <input_file> -o <output_dir>

SLURM Execution

sbatch split_fasta_slurm.sh <input_file> <output_dir>