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0.3.0

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@sgsutcliffe sgsutcliffe released this 08 May 20:30
· 195 commits to main since this release
0.3.0
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0.3.0 - 2025-05-08

Update

  • Update profile_dists to 1.0.5. PR 14
  • Update the locidex version to 0.3.0. locidex merge has integrated the functionality of module input_assure. PR 15

Add

  • Add software_versions.yml to iridanext.output.json.gz global files. PR 14

Changed

  • Change the default profile_dists default setting pd_skip = true. PR 16

Enhancement

  • locidex merge in 0.3.0 now performs the functionality of input_assure (checking sample name against MLST profiles). This allows fastmatchirida to remove input_assure so that the MLST JSON file is read only once, and no longer needs to re-write with correction. PR 15
  • Added a pre-processing step to the input of LOCIDEX_MERGE that splits-up samples, into batches (default batch size: 100), to allow for LOCIDEX_MERGE to be run in parallel. To modify the size of batches use the parameter --batch_size n. PR 15
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