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Version 0.3.0

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@sgsutcliffe sgsutcliffe released this 09 Jan 18:26
· 275 commits to main since this release
0.3.0
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0.3.0 - 2025/01/09

Added

  • Enhanced the pipeline to integrate optional user-provided reference profiles and cluster addresses for additional samples PR #29:

    • Added support for --db_profiles via the APPEND_PROFILES process
    • Added support for --db_clusters via the APPEND_CLUSTERS process

  • Added tests to verify the additional databases can be incorporated and that both databases are required together for their respective processes.

  • Added the ability to include a sample_name column in the input samplesheet.csv. Allows for compatibility with IRIDA-Next input configuration PR #30:

    • sample_name special characters will be replaced with "_"
    • If no sample_name is supplied in the column sample will be used
    • To avoid repeat values for sample_name all sample_name values will be suffixed with the unique sample value from the input file

  • Updated gas/call to version 0.1.2 and both CLUSTER_FILE and APPEND_CLUSTERS to comply with the latest formatting requirements.

Changed

  • Genomic Service Address version 0.1.1 -> 0.1.3

  • Refined the format of reference_cluster.tsv (rclusters) used by GAS CALL to require only id and address columns. This change involved updates to both the append_clusters and cluster_file modules.

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