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@sgsutcliffe sgsutcliffe released this 02 Apr 15:55
· 201 commits to main since this release
0.5.0
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0.5.0 - 2025/04/02

Updated

  • Update the locidex version to 0.3.0. locidex merge has integrated the functionality of module input_assure. PR 45
  • Update the genomic address service version to 0.1.5. Changes how multiple samples without address are assigned addresses when belonging to the same cluster. PR 47 PR 48
  • Update the profile_dist version to 1.0.4. PR 50

Enhancement

  • locidex merge in 0.3.0 now performs the functionality of input_assure (checking sample name against MLST profiles). This allows gasnomenclature to remove input_assure so that the MLST JSON file is read only once, and no longer needs to re-write with correction. PR 45

Changes

  • The output from locidex merge now includes a MLST_error_report.csv similar to that of input_assure (this file is also passed to concat). PR 45
  • The input/output for gasnomenclature "address" has been changed to "genomic_address_name". PR 48
  • Modified the UI for running the pipeline in IRIDA-Next web interface. PR 50
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