0.3.0

Added

• CI tests and Linting PR #6
• Providence to final Measeq_Report.html file PR #5
• Approximate genome position annotation to final report figures PR #5
• nf-validation to work with IRIDA Next PR #6
• nf-iridanext to work with IRIDA Next PR #6
• nf-prov to allow some more providence options PR #5
• Hashes to novel DSId calls so that in the same run new DSIds will match PR #5
  • And they will match in other locations as well
• min_indel_threshold parameter to set the minimum indel threshold required to call an indel PR #6

Adjusted

• Output directories for Nanopore process in the modules.config file PR #6
• Updated artic version from 1.6.2 --> 1.7.4 for nanopore pipeline PR #6
• Ambiguous position handling for illumina data PR #5
  • Specifically for rare postions where there was a low-supported INDEL along with a SNP
• Negative control default string to add in 'en' PR #5
• Samtools depth meta1 to meta as it was breaking the IRIDA-Next plugin PR #6
• Minimum nextflow version required to 24.10.0 PR #5
• Samplesheet input added a sample_name column to work with IRIDA Next PR #6

Removed

• nf-schema and associated workflows PR #6