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v0.9.8.433

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@insights-engineering-bot insights-engineering-bot released this 17 Apr 14:47
v0.9.8.433
2306009

Enhancements

  • Refactored count_abnormal(), count_abnormal_by_baseline(), count_abnormal_by_marked(), count_abnormal_by_worst_grade(), count_abnormal_lab_worsen_by_baseline(), count_cumulative(), count_missed_doses(), coxph_pairwise(), estimate_multinomial_rsp(), estimate_proportion(), estimate_proportion_diff(), estimate_odds_ratio(), summarize_ancova(), summarize_glm_count(), summarize_num_patients(), surv_timepoint(), and test_proportion_diff() to work without make_afun().
  • Refactored afun_riskdiff(), count_occurrences(), count_occurrences_by_grade(), count_patients_with_event(), count_patients_with_flags(), count_values(), estimate_incidence_rate(), h_tab_one_biomarker(), summarize_change(), summarize_colvars(), summarize_patients_exposure_in_cols(), survival_time(), tabulate_rsp_subgroups(), tabulate_survival_subgroups(), tabulate_rsp_biomarkers(), and tabulate_survival_biomarkers() to align with new analysis function style.
  • Added geom_sd and geom_mean_sd to s_summary() as default available statistics.
  • Added denom parameter to estimate_proportion().
  • Added weights_emmeans argument to summarize_ancova().

Bug Fixes

  • Fixed bug in a_count_patients_with_flags() preventing select custom label/indentation formats from being applied.
  • Fixed bug in tabulate_rsp_subgroups() and tabulate_survival_subgroups() preventing the pct option from having an effect when adding a risk difference column.
  • Fixed bug with the order of .stats when adding custom statistical functions.
  • Fixed bug with multiple custom functions not being represented correctly as a list of output stats.

Miscellaneous

  • Began deprecation of the unused table_names argument to count_abnormal_lab_worsen_by_baseline().
  • Began deprecation of the unused h_split_param() function.
  • Began deprecation of the unused label_all parameter to tabulate_rsp_subgroups(), with redirection to the same parameter in extract_rsp_subgroups().
  • Began deprecation of the no longer used helper functions h_tab_one_biomarker(), h_tab_rsp_one_biomarker(), and h_tab_surv_one_biomarker().
  • Updated documentation to remove suggestions to use make_afun().
  • Added warnings for geom_mean statistical output.
  • Moved helper functions h_tab_rsp_one_biomarker() and h_tab_surv_one_biomarker() into h_biomarkers_subgroups.R.
  • Reorganized the utility documentation related to factors (utils_factor.R) into a single file.
  • Converted as_factor_keep_attributes() to an exported function.
  • Removed internal function ungroup_stats() and replaced its usage with the get_*_from_stats() functions.
  • Removed s_count_nonmissing() as it is a non-repeated small and internal function.

Full Changelog: v0.9.8...v0.9.8.433

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