Repository navigation
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Updated the default location of run_logs/ and runtime_artifacts/ to the current working directory (CWD), ensuring the CLI behavior of the installed version better aligns with user expectations.
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Enhanced the upgrade workflow for Windows/uv logic to properly handle self-upgrades, termination of active processes, and false-positive failures caused by entrypoint file locks.
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Rewrote the Quick Setup and Upgrade sections in UserManual.md to ensure the documentation is consistent with actual installation and upgrade behaviors.