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PEIMAN2 v1.1.0

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@pnickchi pnickchi released this 18 Jun 18:14
v1.1.0
04de2f1

PEIMAN2 1.1.0

This release adds support for external PEIMAN2 database updates while keeping the bundled database as the default. Users can now download and cache updated PEIMAN database files and UniProt PTM lists using update_peiman_database().

Analysis functions can use the bundled database, the latest cached database, or a specific dated database version for reproducible analyses. The mass spectrometry translation functions now also support selecting a cached UniProt PTM list version.

The default behavior remains CRAN-safe: package loading, examples, and standard checks continue to use the bundled internal data and do not require internet access.

Main changes

  • Added update_peiman_database() for downloading and caching external data files.
  • Added support for database_version in enrichment workflows.
  • Added support for ptmlist_version in sea2mass() and psea2mass().
  • Added loaders for cached PEIMAN database and UniProt PTM list versions.
  • Updated README documentation with examples for using bundled, latest, and specific database versions.
  • Added GitHub Actions workflow for R CMD check.
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