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Fix broken env overrides, stale vector store, and encoding issues
- Fix config import pattern: use `from . import config` so env var
overrides (LLM_MODEL, EMBEDDING_MODEL, etc.) take effect at runtime
instead of being captured at import time
- Fix requirements.txt: rewrite as UTF-8 with direct deps only
(was UTF-16 with ~99 transitive deps)
- Add stale document removal from FAISS via indexed_urls.json sidecar,
replacing private docstore._dict API usage
- Add incremental cache saving during description generation via
on_progress callback (saves every 10 completions)
- Include folder path in document content and metadata for better
folder-based search
- Remove legacy pickle migration code and pickle import
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>