Wienerbröd v5.5.5
New
- A graphic representation for the Contig class by @BjornFJohansson in #514
- Adding the primer_screen module by @BjornFJohansson in #513
What's Changed
- Fix notebook link by @manulera in #485
- Fix notebook links in docs by @manulera in #493
- New dseq manu bjorn rebased by @manulera in #484
- Dseq mw by @BjornFJohansson in #500
- Add examples for Bioengineering/SynBio projects by @hiyama341 in #486
- Bump urllib3 from 2.5.0 to 2.6.3 by @dependabot[bot] in #501
- Bump filelock from 3.20.0 to 3.20.1 by @dependabot[bot] in #497
- Bump fonttools from 4.60.1 to 4.61.0 by @dependabot[bot] in #491
- Bump pytest from 8.4.2 to 9.0.0 by @dependabot[bot] in #482
- Bump pre-commit from 4.3.0 to 4.4.0 by @dependabot[bot] in #481
- Bump coverage from 7.11.0 to 7.11.3 by @dependabot[bot] in #479
- Bump black from 25.9.0 to 25.11.0 by @dependabot[bot] in #478
- Bump regex from 2024.11.6 to 2025.11.3 by @dependabot[bot] in #480
- Prevent circular sequences to be first or last on linear assemblies by @manulera in #503
- Bump prettytable from 3.16.0 to 3.17.0 by @dependabot[bot] in #508
- Bump pyparsing from 3.2.5 to 3.3.1 by @dependabot[bot] in #507
- Bump pillow from 12.0.0 to 12.1.0 by @dependabot[bot] in #506
- Bump pytest-doctestplus from 1.5.0 to 1.7.0 by @dependabot[bot] in #505
- Bump matplotlib from 3.10.7 to 3.10.8 by @dependabot[bot] in #504
- Cloning history for parsed files and sequences request from genbank + extending opencloning_models by @manulera in #502
- Use only_adjacent_edges=True in restriction_ligation_assembly by @manulera in #509
- [skip ci] update docs readme by @manulera in #516
- Fix printing from the pydna.readers.read when it fails because of too many sequences by @BjornFJohansson in #512
- A graphic representation for the Contig class by @BjornFJohansson in #514
- Adding the primer_screen module by @BjornFJohansson in #513
- Drop underscore imports by @manulera in #524
- Run linters on all python files by @manulera in #525
- Bump coverage from 7.11.3 to 7.13.1 by @dependabot[bot] in #521
- Bump numpydoc from 1.9.0 to 1.10.0 by @dependabot[bot] in #519
- Bump filelock from 3.20.1 to 3.20.3 by @dependabot[bot] in #511
- Bump virtualenv from 20.35.4 to 20.36.1 by @dependabot[bot] in #510
- Bump pre-commit from 4.4.0 to 4.5.1 by @dependabot[bot] in #517
- Bump pytest from 9.0.0 to 9.0.2 by @dependabot[bot] in #518
- Remove unused files by @manulera in #526
- Remove fill_in from assembly2 and use Dseq methods by @manulera in #528
- Update nbstripout by @manulera in #527
- store release names in Gdoc with link from readme by @BjornFJohansson in #529
- removed test code that was never executed. by @BjornFJohansson in #530
Full Changelog: v5.5.4...v5.5.5