Wienerbröd v5.5.5

New

• A graphic representation for the Contig class by @BjornFJohansson in #514
• Adding the primer_screen module by @BjornFJohansson in #513

What's Changed

• Fix notebook link by @manulera in #485
• Fix notebook links in docs by @manulera in #493
• New dseq manu bjorn rebased by @manulera in #484
• Dseq mw by @BjornFJohansson in #500
• Add examples for Bioengineering/SynBio projects by @hiyama341 in #486
• Bump urllib3 from 2.5.0 to 2.6.3 by @dependabot[bot] in #501
• Bump filelock from 3.20.0 to 3.20.1 by @dependabot[bot] in #497
• Bump fonttools from 4.60.1 to 4.61.0 by @dependabot[bot] in #491
• Bump pytest from 8.4.2 to 9.0.0 by @dependabot[bot] in #482
• Bump pre-commit from 4.3.0 to 4.4.0 by @dependabot[bot] in #481
• Bump coverage from 7.11.0 to 7.11.3 by @dependabot[bot] in #479
• Bump black from 25.9.0 to 25.11.0 by @dependabot[bot] in #478
• Bump regex from 2024.11.6 to 2025.11.3 by @dependabot[bot] in #480
• Prevent circular sequences to be first or last on linear assemblies by @manulera in #503
• Bump prettytable from 3.16.0 to 3.17.0 by @dependabot[bot] in #508
• Bump pyparsing from 3.2.5 to 3.3.1 by @dependabot[bot] in #507
• Bump pillow from 12.0.0 to 12.1.0 by @dependabot[bot] in #506
• Bump pytest-doctestplus from 1.5.0 to 1.7.0 by @dependabot[bot] in #505
• Bump matplotlib from 3.10.7 to 3.10.8 by @dependabot[bot] in #504
• Cloning history for parsed files and sequences request from genbank + extending opencloning_models by @manulera in #502
• Use only_adjacent_edges=True in restriction_ligation_assembly by @manulera in #509
• [skip ci] update docs readme by @manulera in #516
• Fix printing from the pydna.readers.read when it fails because of too many sequences by @BjornFJohansson in #512
• A graphic representation for the Contig class by @BjornFJohansson in #514
• Adding the primer_screen module by @BjornFJohansson in #513
• Drop underscore imports by @manulera in #524
• Run linters on all python files by @manulera in #525
• Bump coverage from 7.11.3 to 7.13.1 by @dependabot[bot] in #521
• Bump numpydoc from 1.9.0 to 1.10.0 by @dependabot[bot] in #519
• Bump filelock from 3.20.1 to 3.20.3 by @dependabot[bot] in #511
• Bump virtualenv from 20.35.4 to 20.36.1 by @dependabot[bot] in #510
• Bump pre-commit from 4.4.0 to 4.5.1 by @dependabot[bot] in #517
• Bump pytest from 9.0.0 to 9.0.2 by @dependabot[bot] in #518
• Remove unused files by @manulera in #526
• Remove fill_in from assembly2 and use Dseq methods by @manulera in #528
• Update nbstripout by @manulera in #527
• store release names in Gdoc with link from readme by @BjornFJohansson in #529
• removed test code that was never executed. by @BjornFJohansson in #530

Full Changelog: v5.5.4...v5.5.5