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Make ‘identity’ the default value for the [by] argument in the convert2Tracklets() function.
Make ‘frame’ the default value for the [timeCol] argument in the ANND(), resampTracklets(), sinuosity(), speed(), temporalBoot(), temporalTrend(), turnAngle() functions.
speed() function now accept [frameR] (frame rate) and [timeU]
(time unit) arguments allowing to return speed values according to the
desired unit (e.g., pixels per frame, pixels per second).
Make “1” the default value for the [sampling] argument in the ANND() function.
Change the default value of the [flipY] argument in the readIdTracker() functions from TRUE to FALSE as for other “read”
functions
Add “AnimalTA” to an error message returned by the DLsampleData()
function when the [tracker] argument is misspelled.
Add the possibility of retrieving the path to several tracking outputs
at the same time using DLsampleData().
Solve an error when both [selTrack] and [timeWin] arguments were
specified in drawTracklet() with several time windows, drawing only
the specified tracklets on the first time window.
Processing time of drawTracklet() has also been speed up.
The “read” functions aiming to import tracking data from various
tracking software now return an object of class (S3) “tracklets”,
corresponding to a list of tracklets, meaning that converting the
output of “read” functions to a list of tracklets (using convert2Tracklets()) before further processing is no longer needed.
Add setInfo() and getInfo() functions to the utilities to specify
and retrieve useful information such as frame rate (frameR), scale
(scale) and image resolution (imgRes) to the tracklets object,
allowing to avoid unnecessary repetition of code over several
functions.
Add the possibility to subset “varList” and “tracklets” objects using [], also allow to use as.data.frame() on varList object to convert
it to a data frame.
convert2List() now returns an object of class “varList” which is
still a list of variables and conserve the additional information
appended to the converted tracklets object, meaning that additional
information are conserved over conversion from tracklets to varList
and back to tracklets.
trackstats() is now deprecated (but still can be used) and is
replaced by summary() according to the use of S3 methods for
tracklets class objects when importing tracking data.
Add the possibility to compute the distance between particles
trajectory and a polygon edges using dist2Edge() by setting
customFunc = “PolygonArena”.
cutTracklets() and sortVertices() functions are now considered as
an internal function and cannot be used anymore (prefer using
filterTracklets).
Reduce code redundancy by creating an internal function to return
error messages .errorCheck.