Skip to content

v1.3.0

Choose a tag to compare

@ranlib ranlib released this 05 Sep 22:27
· 271 commits to master since this release

Notes:

  1. new varpipe docker to deal with CDC regions
  2. add lineage task
  3. add LIMS report
  4. replace variant_interpretation task with interpretation workflow
  5. interpretation workflow = variant_interpretation + lineage calling + LIMS report
  6. replace delly task with structural variant workflow
  7. structural variant workflow = task delly for large deletions + snpEff annotation of larget deletions
  8. add concatenation task = concatenate vcf from variant caller and vcf from delly
  9. use concatenated vcf for interpretation workflow
  10. add snpit as additional lineage caller