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Merge yaib configs#12

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manuelburger merged 54 commits intomainfrom
merge-yaib-configs
Apr 3, 2024
Merged

Merge yaib configs#12
manuelburger merged 54 commits intomainfrom
merge-yaib-configs

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@manuelburger
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@manuelburger manuelburger commented Mar 26, 2024

TODO:

  • outcomes
  • outcomes: add sic support for death_icu and death_hosp
  • sic support for los_hosp
  • outputs
  • respiratory
  • vitals
  • sic support urine_rate
  • Finish integration of spo2 and sao2 from o2sat for missing datasets
  • Support extraction of patient-id for each dataset

prockenschaub and others added 30 commits April 26, 2023 07:50
some values are only taken once during the hour and thus have a cnt=1 and rawdata=NA. The actual data is stored in Val, which otherwise holds the average. Since after expansion, rawdata is the main data field, the value from Val needs to be moved to rawdata in this case.
@manuelburger manuelburger linked an issue Mar 26, 2024 that may be closed by this pull request
…aib-configs # Please enter a commit message to explain why this merge is necessary,
@mlondschien
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Can you rebase to get a reasonable diff?

@manuelburger
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Can you rebase to get a reasonable diff?

I think right now the diff is fine without the rebase, no?

@manuelburger manuelburger self-assigned this Mar 31, 2024
@mlondschien
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Top! IIUC these are mostly taken from YAIB / icuDG-preprocessing, whose authors I trust more on this than myself. Generally, I would like to see more comments, as all the callbacks are non-trival. But this should be done by the original author, so for anything copy-pasted that's ok.

@manuelburger manuelburger merged commit 0f8362d into main Apr 3, 2024
@manuelburger manuelburger deleted the merge-yaib-configs branch April 3, 2024 13:28
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Merge YAIB configs

4 participants