A Nextflow implementation of the MetaWRAP pipeline (Uritskiy et al., 2018) designed for reproducible and scalable metagenomic data analysis across diverse environments.
- Clone the Repository:
git clone https://github.com/rayhanmp/NF-MetaWRAP.git
cd NF-MetaWRAP- Install Nextflow:
curl -s https://get.nextflow.io | bash- Set Up Conda:
conda create -n nf-metawrap-env -c bioconda nextflow
conda activate nf-metawrap-env- (Optional) Verify Installation:
nextflow run main.nf -profile testIf you use NF-MetaWRAP in your work, please cite the original MetaWRAP paper:
Uritskiy, G. V., DiRuggiero, J., & Taylor, J. (2018). MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis. Microbiome, 6(1), 158. https://doi.org/10.1186/s40168-018-0541-1
If you'd like to credit NF-MetaWRAP specifically, please mention this repository in your work with:
"This research utilized the NF-MetaWRAP pipeline (GitHub Repository) for metagenomic data analysis."
This project is licensed under the MIT License.