SNP calling (initial release)

1.0.0

Delete .DS_Store

0.3.4

• major code refactoring: all information associated with variants are stored in struct VariantInfo -> better code readability and will facilitate future developments
• minor improvement: selection of forward and reverse-complement variant groups now based on sample distributions -> more stable output

Version tested with simulated insertions and 37 Mtb partitions (same results as v0.3.1).

0.3.3

_ proper lookup of skf files (thanks to John)

runtimes are nearly half those of v0.3.1

0.3.2

_ faster graph traversal (0.25 sec. per sample instead of 0.4 sec.)
_ minor code refactoring: extremity nodes are now contained in 2 variables

0.3.1

update variant filtering:

• filter based on homopolymers is now off by default
• variants with unclear insert size are not discarded anymore, and marked as such in the output file

0.3.0

Too many modifications to list.
Let's consider this the initial release.

0.2.0

initial release