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Major finalization before case studies#99

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hechth merged 193 commits into
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rdurnik/issue98
Apr 17, 2026
Merged

Major finalization before case studies#99
hechth merged 193 commits into
mainfrom
rdurnik/issue98

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@rdurnik

@rdurnik rdurnik commented Feb 6, 2026

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Major finalization before case studies

@rdurnik
rdurnik requested a review from hechth February 6, 2026 17:01
@rdurnik rdurnik linked an issue Feb 6, 2026 that may be closed by this pull request
@hechth hechth closed this Feb 9, 2026
@hechth hechth reopened this Feb 9, 2026
@rdurnik

rdurnik commented Feb 16, 2026

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I will merge feature/100 Find relationships in tables, normalize chemical names using text generation into this so that I can continue working on parsing corrupted PDF files.

@rdurnik rdurnik changed the title Fix 98/ PyMuPDF should return cleaner full text Fix 98/ PyMuPDF should return cleaner full text, Text generation tables Feb 16, 2026
@rdurnik rdurnik changed the title Fix 98/ PyMuPDF should return cleaner full text, Text generation tables Fix 98/ PyMuPDF should return cleaner full text, Text generation for tables + normalization, Corrupt PDFs Feb 16, 2026
@rdurnik rdurnik changed the title Fix 98/ PyMuPDF should return cleaner full text, Text generation for tables + normalization, Corrupt PDFs Feature 98/ PyMuPDF should return cleaner full text, Text generation for tables + normalization, Corrupt PDFs Feb 16, 2026
@rdurnik

rdurnik commented Feb 16, 2026

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You probably can not find a corrupted PDF that would be in the Europe PMC open access database. So I added first page of a corrupted PDF for testing purposes.

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@hechth
hechth merged commit ce69d98 into main Apr 17, 2026
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