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Upgrade langchain (1.3.0-pre) #162

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Upgrade langchain (1.3.0-pre) #162

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94c35e9
upgrade langchain-core
GFJHogue Apr 29, 2026
bb9c102
adjust chunk size for embeddings generation
GFJHogue Apr 29, 2026
f7a5e5c
docker build/push for pushes to release/* branches
GFJHogue Apr 29, 2026
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3 changes: 2 additions & 1 deletion .github/workflows/ci.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,7 @@ on:
push:
branches:
- main
- release/*

permissions:
id-token: write
Expand Down Expand Up @@ -81,7 +82,7 @@ jobs:
path: /tmp/image.tar

docker-push:
if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/main' }}
if: ${{ github.event_name == 'push' && (github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/heads/release/')) }}
needs: docker-build
runs-on: ubuntu-latest

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63 changes: 49 additions & 14 deletions poetry.lock
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4 changes: 2 additions & 2 deletions src/data_generation/reactome/__init__.py
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Expand Up @@ -53,13 +53,13 @@ def upload_to_chromadb(
embeddings_instance: Embeddings
if hf_model is None: # Use OpenAI
embeddings_instance = OpenAIEmbeddings(
chunk_size=500,
chunk_size=400,
show_progress_bar=True,
)
elif hf_model.startswith("openai/text-embedding-"):
embeddings_instance = OpenAIEmbeddings(
model=hf_model[len("openai/") :],
chunk_size=500,
chunk_size=400,
show_progress_bar=True,
)
elif "HUGGINGFACEHUB_API_TOKEN" in os.environ:
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4 changes: 2 additions & 2 deletions src/data_generation/uniprot/__init__.py
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Original file line number Diff line number Diff line change
Expand Up @@ -44,13 +44,13 @@ def upload_to_chromadb(
print("Using OpenAI embeddings")
embeddings_instance = OpenAIEmbeddings(
model="text-embedding-3-large",
chunk_size=800,
chunk_size=500,
show_progress_bar=True,
)
elif hf_model.startswith("openai/text-embedding-"):
embeddings_instance = OpenAIEmbeddings(
model=hf_model[len("openai/") :],
chunk_size=800,
chunk_size=500,
show_progress_bar=True,
)
elif "HUGGINGFACEHUB_API_TOKEN" in os.environ:
Expand Down
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