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1. scTCRseq scTCRseq Public

   Forked from ElementoLab/scTCRseq

   One of the first pipelines to recover paired full-length TCR alpha/beta from single-cell RNA-seq (Genome Medicine 2016; first author)

   Python

2. MDS.Manuscript MDS.Manuscript Public

   Forked from BoneMarrowMxIFImaging/MDS.Manuscript

   MDS-MAPS: deep-learning spatial pipeline for bone-marrow multiplex-IF imaging that beats blast% at scoring disease state (Leukemia 2026; co-senior author)

   Jupyter Notebook

3. Single-cell-atlas-of-human-pancreatic-islet-and-acinar-endothelial-cells-in-health-and-diabetes Single-cell-atlas-of-human-pancreatic-islet-and-acinar-endothelial-cells-in-health-and-diabetes Public

   Single-cell atlas of human pancreatic islet & acinar endothelial cells in health and diabetes (Nat Commun 2025; senior author)

   Python