v1.0.0

Changelog:

• cross-validation results reformatting,
• remove --keep flag (--reuse-db is sufficient),
• change underscore (_) to dash (-) in all CLI options,
• time and memory optimizations,
• better messages and detecting more risky situations,
• various minor bugs fixes.

v0.22.0

Changelog:

• fix results of statistics, when they cannot be computed and should return NaN
• normalized matrix is saved on demand only (--save_n)
• add second verbosity level (double -v switch) and add detailed log generation

v0.21.0

Changelog:

• add option to reuse k-mers databases created eariler wih --keep parameter (--reuse-db parameter) - especially for debug and experiments purposes
• fix bugs, when no cross-validation is performed, and removing wrong asserts
• fix building process

v0.20.0

Changelog:

• add cross-validation (--cv, --leave, --cv-seed parameters)
• add option to choose function DIDS is basing on (--pca-mode parameter)
• add explained variance generation for PCA

v0.19.0

Changelog:

• keep all statistics values in output files
• add k-mers headers to FASTA files
• fix SNR
• fix UMAP CLI parameters bug
• new debug switch --generate_snr_for_unnormalized_data
• better messages
• better CLI parameters

v0.18.0

Changelog:

• added dimensionality reduction with PCA
• Singal to Noise ratio may be generated for uncorrected counts
• remove unnecessary files

v0.0.17

Changelog:

• fix k-mers filtering

v0.0.16

Changelog:

• allow multi-FASTA as a list of k-mers to keep (for --flt parameter)
• better help (and messages)

v0.0.15

Changelog:

• support for small k added

v0.0.14

Changelog:

• fix t-test,
• fix counts scaling for t-test.