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parglm 0.1.9

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@remlapmot remlapmot released this 12 May 13:44
· 46 commits to master since this release
d6ce350
  • Add biglm, fastglm, glm2, and mgcv to the timing comparison in the parglm.Rmd vignette. And add some timings for fewer observations and fewer coefficients.
  • Bump roxygen2 to 8.0.0
  • Remove busy-wait polling in qr_parallel::get_stacks_res
  • Return eta and mu from parallelglm to skip R-side recomputation
  • Sum only upper triangle of per-chunk Fisher information in FAST path
  • Drop const from R_F members to enable move semantics
  • Hoist NA-zeroing of beta out of per-chunk workers
  • Use thread_local index for thread_pool::get_id
  • Skip intermediate matrix when reverse-pivoting R
  • Cache parglm_supported keys to avoid rebuilding family objects per fit
  • Change the default of parglm.control(nthreads) to be parallelly::availableCores(omit = 1L) to make better use of available cores
  • Replace linked-list task queue with deque under single mutex
  • Fuse X chunk copy and weight scaling into one memory pass
  • Support quasibinomial() and quasipoisson() family specification
  • Enable full compatibility with the sandwich package for robust standard errors, including adding comments to the parglm helpfile, a new vignette, and tests
  • Add fastglm's method = 3L, and parglm's parglm.control(method = "LAPACK") to the benchmarks in the parglm.Rmd vignette
  • Allow for two column response for family binomial and quasibinomial
  • Fix issue with order in summary.parglm and vcov.parglm
  • Warn rather than error when starting values cannot be found
  • Add confint.parglm to fix profile and Wald CI compatibility, and to give compatibility with the gtsummary package (e.g., gtsummary::tbl_regression())
  • Add tidy_parglm_robust for tidying a parglm model with robust standard errors
  • Add gtsummary examples to the second vignette