Bug Fixes:
- Fixed handling of zero variance non-monomorphic variants in SKAT tests
- Fixed allele flipping bug in TTE mode in HTP sumstats output (affects SCORE info field)
- Improved numerical stability in logistic likelihood computation
- Address separation issues in logistic regression which caused inflated results for variants with no case-carriers
New Restrictions:
- Prevented incompatible use of
--t2ewith--interaction