v1.0.0-beta

What's Changed

• Marie lataretu/issue23 by @MarieLataretu in #39
• reference index file incomplete by @MarieLataretu in #41
• Marie lataretu/issue42 by @MarieLataretu in #43
• problem when input files end with clean by @MarieLataretu in #48
• add --split-prefix to minimap2 by @MarieLataretu in #49
• Marie lataretu/issue47 by @MarieLataretu in #50
• Updates for cloud run by @hoelzer in #51
• check for newlines when concat fastas by @MarieLataretu in #53
• Feature clean work dir by @MarieLataretu in #59
• Dev by @MarieLataretu in #54

Full Changelog: v0.2.0...v1.0.0-beta

Usage changes

• input parameter usage:
  • before: --[nano|illumina|illumina_single_end|fasta]
  • now: --input_type [nano|illumina|illumina_single_end|fasta] --input *.fastq