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version 1.4.0

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@rnakato rnakato released this 23 Sep 03:30
· 159 commits to main since this release
v1.4.0
7790631

1.4.0 (2023-8-01)

  • Bug fix for HOMER installation in Dockerfile
  • Change the parameter of BWA MEM from -SP to -5SP

1.3.1 (2023-7-08)

  • Change the name of output directory for custardpy_juicer, custardpy_cooler_HiC, and custardpy_cooler_MicroC

1.3.0 (2023-7-06)

  • Modify custardpy_cooler_HiC and custardpy_cooler_MicroC to allow multiple FASTQ files
  • Change the name of output directory for custardpy_juicer, custardpy_cooler_HiC, and custardpy_cooler_MicroC
  • Modify options of Pairtools according to the tutorial
  • Add python-FIREcaller
  • Add the restriction files of Cooler for various genome builds and enzymes (see the help of custardpy_cooler_HiC)
  • Bug fix: Wrong PATH of pairsqc.py

1.2.0 (2023-6-11)

  • Add 3DChromatin_ReplicateQC
  • add run_3DChromatin_ReplicateQC.sh for executing 3DChromatin_ReplicateQC
  • Updated custardpy_cooler_HiC and custardpy_cooler_MicroC

1.1.1 (2023-06-07)

  • Add GENOVA
  • Add calculate_compartment_strength command to calculate compartment strength
  • Add HiCUP
  • Bug fix of pairtools and numpy version conflict
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