version 1.7.2

1.7.2 (2024-02-03)

• Modified gethg38genome.sh and getmm39genome.sh to also create the genometable file.
• Bug fix in samtools installation
• Updated SAMtools from 1.17 to 1.19.2
• Updated SRAtoolkit from 3.0.2 to 3.0.10
• Change WORKDIR from /opt to /home/ubuntu
• Installed sudo

1.7.1 (2024-01-23)

• Modified gethg38genome.sh and getmm39genome.sh to also download the refFlat data.

1.7.0 (2024-01-07)

• Fixed the bug in plotHiCfeature where TADs and loops were not being rendered
• Removed the restriction site directories of Juicer and Cooler from this repository to reduce the size
• Added generate_binlist_from_gtfile.py for 3DChromatin_ReplicateQC analysis
• Added 07.QualityCheck.sh in tutorial/Hi-C

1.6.0 (2024-01-06)

• Added Mustache
• Added Chromosight
• Update Hi-C Tutorial that uses Nakato et al.,s RPE cells for the example data