Improving slicing abstraction with GraphView

[JoOkuma]

This PR includes the content of #9 and it can be closed once this is merged.

[codecov-commenter]

Codecov Report

Attention: Patch coverage is 82.25108% with 41 lines in your changes missing coverage. Please review.

Project coverage is 91.81%. Comparing base (f624781) to head (d8798d7).

Files with missing lines	Patch %	Lines
src/tracksdata/graph/_graph_view.py	80.19%	12 Missing and 8 partials ⚠️
src/tracksdata/functional/_napari.py	0.00%	18 Missing ⚠️
src/tracksdata/graph/_rustworkx_graph.py	95.23%	2 Missing and 1 partial ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main      #16      +/-   ##
==========================================
- Coverage   94.35%   91.81%   -2.55%     
==========================================
  Files          22       25       +3     
  Lines         638      733      +95     
  Branches      106      121      +15     
==========================================
+ Hits          602      673      +71     
- Misses         21       43      +22     
- Partials       15       17       +2     

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[github-actions]

Benchmark Results

· Discovering benchmarks
· Running 2 total benchmarks (1 commits * 1 environments * 2 benchmarks)
[ 0.00%] ·· Benchmarking existing-py_home_runner_work_tracksdata_tracksdata_.venv_bin_python3
[25.00%] ··· Running (graph_backends.GraphBackendSuite.time_simple_workflow--).
[50.00%] ··· Running (graph_backends.RustWorkXGraphBackend.time_points--).
[75.00%] ··· ...kends.GraphBackendSuite.time_simple_workflow                 ok
[75.00%] ··· ========================================================= ========= ============
                                      backend                           n_nodes              
             --------------------------------------------------------- --------- ------------
              tracksdata.graph._rustworkx_graph.RustWorkXGraphBackend     1000     454±4ms   
              tracksdata.graph._rustworkx_graph.RustWorkXGraphBackend    10000    4.57±0.02s 
              tracksdata.graph._rustworkx_graph.RustWorkXGraphBackend    100000   48.7±0.02s 
             ========================================================= ========= ============

[100.00%] ··· ...h_backends.RustWorkXGraphBackend.time_points            153±1ns

[github-actions]

Benchmark Results

· Discovering benchmarks
· Running 2 total benchmarks (1 commits * 1 environments * 2 benchmarks)
[ 0.00%] ·· Benchmarking existing-py_home_runner_work_tracksdata_tracksdata_.venv_bin_python3
[25.00%] ··· Running (graph_backends.GraphSuite.time_simple_workflow--).
[50.00%] ··· Running (graph_backends.RustWorkXGraph.time_points--).
[75.00%] ··· graph_backends.GraphSuite.time_simple_workflow                  ok
[75.00%] ··· ================================================== ========= =========
                                  backend                        n_nodes           
             -------------------------------------------------- --------- ---------
              tracksdata.graph._rustworkx_graph.RustWorkXGraph     1000    458±4ms 
              tracksdata.graph._rustworkx_graph.RustWorkXGraph    10000    4.58±0s 
              tracksdata.graph._rustworkx_graph.RustWorkXGraph    100000   49.4±0s 
             ================================================== ========= =========

[100.00%] ··· graph_backends.RustWorkXGraph.time_points                  148±3ns

[github-actions]

Benchmark Results

· Discovering benchmarks
· Running 2 total benchmarks (1 commits * 1 environments * 2 benchmarks)
[ 0.00%] ·· Benchmarking existing-py_home_runner_work_tracksdata_tracksdata_.venv_bin_python3
[25.00%] ··· Running (graph_backends.GraphSuite.time_simple_workflow--).
[50.00%] ··· Running (graph_backends.RustWorkXGraph.time_points--).
[75.00%] ··· graph_backends.GraphSuite.time_simple_workflow                  ok
[75.00%] ··· ================================================== ========= ============
                                  backend                        n_nodes              
             -------------------------------------------------- --------- ------------
              tracksdata.graph._rustworkx_graph.RustWorkXGraph     1000     459±4ms   
              tracksdata.graph._rustworkx_graph.RustWorkXGraph    10000    4.57±0.01s 
              tracksdata.graph._rustworkx_graph.RustWorkXGraph    100000   48.6±0.06s 
             ================================================== ========= ============

[100.00%] ··· graph_backends.RustWorkXGraph.time_points                153±0.7ns