Version 0.9.0

[rsgalloway]

Version 0.9.0 RC

• Adds initial versions of pyseq aware cli tools
• Allows piping to lss
• Adds function type hints
• Adds additional frame detection patterns to env file
• Addresses issue Sequence.missing() not checking Item.exists() #44
• Addresses issue add type hints #77
• Addresses issue add copy command #78
• Addresses issue lss without trees is more versatile #81
• Addresses issue lss allow piping in and out #82
• Addresses issue pyseq.uncompress() does not work with filenames containing whitespaces #86
• Bumps version to 0.9.0

[Copilot]

Pull Request Overview

This PR bumps the version to 0.9.0 and introduces a suite of new CLI tools (scopy, smove, sdiff, sfind, stree, and lss) along with comprehensive tests and added function type hints. Key changes include support for piping input to lss, enhanced type annotations across the codebase, and several improvements and new commands in the pyseq package.

Reviewed Changes

Copilot reviewed 34 out of 37 changed files in this pull request and generated no comments.

File	Description
tests/*	New unit tests for scopy, pyseq, lss, config, and other CLI tools
lib/pyseq/*.py	Added type hints and minor refactorings in several modules (seq, util, scopy, smove, sdiff, lss, config, etc.)
setup.py & README.md	Updated console entry points and documentation samples

Files not reviewed (3)

• CHANGELOG: Language not supported
• dist.json: Language not supported
• pyseq.env: Language not supported

Comments suppressed due to low confidence (2)

lib/pyseq/config.py:56

• [nitpick] Consider refactoring the use of global variables in set_frame_pattern to reduce potential side effects, especially in multithreaded or complex environments.

frames_re = re.compile(PYSEQ_FRAME_PATTERN)

lib/pyseq/seq.py:444

• [nitpick] The setslice method is deprecated in Python 3; consider removing it and handling slicing exclusively through setitem.

def __setslice__(self, start: int, end: int, item: Union[Item, str, List[str]]):