release: CORNETO v1.0.0-rc.3 - #57
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Rebuild CellNOpt inference around vectorized Boolean propagation, shared structural flow, and acyclic connectivity. Add CORNETO-integrated model and fit plotting, renderer improvements, outcome-based tests, and an executable signaling guide. Co-authored-by: Attila Gabor <3891745+gabora@users.noreply.github.com> Co-authored-by: Martin Garrido Rodriguez-Cordoba <61513563+martingarridorc@users.noreply.github.com>
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Summary
CellNOptDAGsignaling workflow and plotting helperscellnoptILPimplementation andcorneto.methods.signalnamespace without compatibility shimsmainas the single PR release gate and document the RC3 release scopeImpact
RC3 exposes
corneto.methods.signaling.CellNOptDAGas the supported CellNOpt-style API.Validation
poetry run pytest -q— 486 passed, 33 skippedpoetry run ruff check --no-fix corneto testspoetry run ruff format --check corneto testspoetry checkpoetry run sphinx-build -W --keep-going -b html docs ...poetry buildandtwine checkfor wheel and sdistgit diff --check public/main..dev