Skip to content
View samavinasir's full-sized avatar

Block or report samavinasir

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
samavinasir/README.md

Hi there, I'm Samavi Nasir 👋

AI Engineer • Bioinformatician • Machine Learning Researcher



🧬 About Me

I'm an AI Engineer and Bioinformatician passionate about developing intelligent systems that accelerate biological discovery and healthcare research.

My work combines Machine Learning, Large Language Models, Protein Language Models, and Bioinformatics to solve real-world problems in computational biology.

🔭 Current Focus

  • 🤖 Agentic AI
  • 🧠 Large Language Models
  • 🧬 Protein Language Models
  • ⚡ Apache Spark
  • 📊 Distributed AI
  • 🏥 Clinical AI
  • 🔬 Multi-omics

🚀 Featured Projects

🧬 VacSol-ML (ESKAPE)

Machine learning-powered reverse vaccinology platform for predicting vaccine candidates against ESKAPE pathogens.

Highlights

  • Ensemble Machine Learning
  • Protein Feature Engineering
  • Reverse Vaccinology
  • Django Web Platform
  • Research Publication

🧬 AI-assisted Protein Annotation Platform

A bioinformatics platform integrating traditional annotation pipelines with Protein Language Models for automated protein functional annotation.


🧬 Pangenome Analysis Platform

Interactive comparative genomics platform featuring

  • Functional Annotation (COG)
  • Pangenome Analysis
  • Phylogenetic Analysis
  • Interactive Visualization

🚛 Intelligent Route Optimization API

Full-stack Django application implementing

  • Fuel Stop Optimization
  • Driver Hours-of-Service
  • Route Planning
  • React + Django
  • Leaflet Maps

🛠 Tech Stack

Languages

AI / Machine Learning

  • HuggingFace Transformers
  • Scikit-Learn
  • XGBoost
  • LightGBM
  • Pandas
  • NumPy

Backend


Frontend


Databases


DevOps & Tools


Bioinformatics

  • Biopython
  • BLAST
  • DIAMOND
  • SignalP
  • NetMHCpan
  • NetMHCIIpan
  • IEDB
  • Comparative Genomics

🔬 Research Interests

  • Reverse Vaccinology
  • Vaccine Informatics
  • Protein Annotation
  • Protein Language Models
  • Large Language Models
  • Multi-omics
  • Explainable AI
  • Clinical AI
  • Drug Discovery

📄 Publications

  • 🧬 Machine Learning-driven Vaccine Candidate Prediction against ESKAPE Pathogens
  • 🧬 AI-assisted Protein Annotation using Protein Language Models

📊 GitHub Statistics


🔥 GitHub Streak


📈 Contribution Graph


🏆 GitHub Achievements


🌍 Connect With Me

  

  

  

  


💙 "Building AI that advances Biology, Healthcare, and Scientific Discovery."

Pinned Loading

  1. B-Pan B-Pan Public

    Pan-genome analysis and COG-based functional annotation tool for bacterial proteomes. Built in Python with a Tkinter GUI. Performs core/accessory/unique gene classification and phylogenetic analysi…

    HTML

  2. eld-route-planner eld-route-planner Public

    A full-stack route planning and fuel optimization application built with React + Vite on the frontend and Django REST Framework on the backend. The application helps commercial drivers plan trips b…

    Python

  3. Fuel_Route_API Fuel_Route_API Public

    Django REST API that finds the cheapest fuel plan for US road trips. Input start/finish, get route geometry, cost‑optimal fuel stops (500‑mile range), and totals for distance, gallons, and cost (10…

    Python

  4. VacSol-ML-ESKAPE-Installable VacSol-ML-ESKAPE-Installable Public

    Machine learning framework for vaccine target discovery in ESKAPE pathogens — extracts sequence-based features and classifies candidate proteins with confidence scoring. Installable via pip, includ…

    JavaScript

  5. Aiman4-siddique/ESKAPE_DATABASE_WORK Aiman4-siddique/ESKAPE_DATABASE_WORK Public

    ESKAPE Pathogen–Targeted Antimicrobial Peptide Database

    HTML

  6. proteoannot proteoannot Public

    Standalone Python package for annotating protein sequences with biological and physicochemical properties (iFeature, IEDB, SignalP) for reverse vaccinology. Extracted from VacSol-ML(ESKAPE); suppor…

    Python