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Import/export of standard file types

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@puethe puethe released this 07 Jan 17:09
· 72 commits to master since this release
1fa2521
  • Import/export FASTA as 'chado import fasta' / 'chado export fasta'
  • Import/export GFF as 'chado import gff' / 'chado export gff'
  • Import/export GAF as 'chado import gaf' / 'chado export gaf'
  • Import of 'essential' database entries for initial setup as 'chado import essentials'
  • ORM for 'companalysis' module
  • genome version as additional column in ORM of 'organism' table
  • backup of audit schema as 'chado admin setup -s audit_backup' / 'chado execute audit_backup'
  • updated README
  • changelog
  • Measuring of test coverage by using 'codecov'
  • print query results as CSV or JSON as e.g. 'chado query -F json'