Genome mappability

[priyanka-surana]

Description of feature

It is equal to percentage of reads mapped to the genome.
Possible software: WGSIM

[priyanka-surana]

It is already calculated by GRIT. Where do we find this information?

[muffato]

GRIT typically record things in their Jira server. Double-check with Jo if they do it on the final assembly

[priyanka-surana]

https://github.com/eeaunin/gda/blob/main/feature_extraction/run_wgsim.py

[tkchafin]

Probably faster option? https://github.com/cpockrandt/genmap