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Version 3.2.3

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@mojaveazure mojaveazure released this 15 Dec 17:13
· 3652 commits to master since this release
v3.2.3
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Deprecations

  • do.cpp parameter in IntegrateData and TransferData deprecated and will default to true

Changes

  • Same deprecated in favor of base::identity
  • Fix in DietSeurat to work with specialized Assay objects
  • Fix p-value return when using the ape implementation of Moran's I
  • Fix bug in FindMarkers when using MAST with a latent variable
  • Updates to Key<-.DimReduc that allow handling of empty reduction column names
  • Allow setting ctrl in CellCycleScoring
  • Modify subset.Seurat to allow specialized Assay subsetting methods
  • Fix image selection in interactive spatial plots
  • Update Rcpp functions with export(rng=FALSE) to avoid potential future warnings
  • Fix RenameCells bug for integrated SCT assays
  • Fix highlight order with proper factor levels when using SetHighlight in plots
  • Small change in CellRanger version detection logic of h5 file to improve robustness to outside tools.

Additions

  • Titles added to DimPlot when specifying group.by parameter
  • keep.scale parameter added to FeaturePlot to control scaling across multiple features and/or splits.
  • raster parameter in various scatter plots (eg. DimPlot, FeaturePlot, CellScatter) for plot-native rasterization instead of using AugmentPlot
Assets 2
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