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multichain-cluster-analysis
multichain-cluster-analysis PublicThis code lets its users get different outputs related to cluster analysis from a GROMACS simulation trajectory for multichain systems. It is slightly different from the traditional cluster analysi…
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interchain-intrachain-contacts
interchain-intrachain-contacts PublicPython tools to compute interchain and intrachain contacts from GROMACS trajectories using a PLUMED-style switching function. Supports PBC, chain-wise analysis, residue exclusion, and generates tim…
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protein-electrostatic-interaction-matrix
protein-electrostatic-interaction-matrix PublicThis code calculates a residue-level interactive electrostatic interaction map and distance matrix of a protein from a gromacs trajectory
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