BUG add ref_level argument to sub_dds when refitting cooks outliers#143
Merged
BorisMuzellec merged 2 commits intomainfrom Jun 14, 2023
Merged
BUG add ref_level argument to sub_dds when refitting cooks outliers#143BorisMuzellec merged 2 commits intomainfrom
BorisMuzellec merged 2 commits intomainfrom
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What does your PR implement? Be specific.
The
ref_levelargument is missing fromsub_ddsin_refit_without_outliers. This can result in LFCs having the wrong sign for genes whose parameters are refitted.