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v0.30.3 - gget virus updates

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@lauraluebbert lauraluebbert released this 27 Feb 02:17
· 173 commits to main since this release
v0.30.3
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Learn about vigilant mode.

Version ≥ 0.30.3 (Feb 26, 2026):

  • gget virus: New filtering options, quiet mode, and improved download reliability
    • Added --segment filter for segmented viruses (e.g., Influenza A segments like 'HA', 'NA', 'PB1')
    • Added --vaccine_strain filter to include or exclude vaccine strain sequences
    • Added --source_database filter to select sequences from 'genbank' or 'refseq' (replaces refseqOnly)
    • Added -q / --quiet flag to suppress progress information
    • Extended fallback strategies for improved download reliability on large datasets
    • Command summary file now includes software version
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