import pertpy as pt
import scanpy as sc
adata = pt.dt.bhattacherjee()
milo = pt.tl.Milo()
mdata = milo.load(adata)
sc.pp.neighbors(mdata["rna"])
milo.make_nhoods(mdata["rna"])
mdata = milo.count_nhoods(mdata, sample_col="orig.ident")
milo.da_nhoods(mdata, design="~label")
milo.annotate_nhoods(mdata, anno_col='cell_type')
milo.plot_da_beeswarm(mdata)
Report
Last line gives an
AttributeError:Version information
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