latest version error

[vladie0]

Dear developers,

in an attempt to instal the latest version of scanpy from GitHub (Master branch), I receive the following error:

Traceback (most recent call last):
File "/home/vladie/PycharmProjects/PY3/RPE_MYCN_10X.py", line 4, in
import scanpy.external as sce
File "/usr/local/lib/python3.6/dist-packages/scanpy/init.py", line 33, in
from . import datasets, logging, queries, external
File "/usr/local/lib/python3.6/dist-packages/scanpy/external/init.py", line 1, in
from . import tl
File "/usr/local/lib/python3.6/dist-packages/scanpy/external/tl.py", line 4, in
from ._tools._palantir import palantir
ModuleNotFoundError: No module named 'scanpy.external._tools'

I would like to run palentir through Scanpy, is this already possible ?
Kind regards,
Vladie0

[ivirshup]

Looks like the same error hit in #585, as well as #493 (comment).

@flying-sheep I haven't been able to reproduce, but maybe we should just throw an __init__.py in there, since it fixes this for @fbrundu, before the v1.4.1 release?

[flying-sheep]

Sure, why not? It’s not a bug though 😉

[ivirshup]

@vladie0, would you mind pulling again and checking if it works now?

@flying-sheep if at least four people can't install the package (including in a clean conda environment on a lab mate's machine), what do you call it? I don't think it's our fault, but I think there's a bug somewhere.

[flying-sheep]

Of course, sorry: It’s not our bug. I think the bug label means “we have/had a bug and need(ed) to fix it” and not “we’re catching and working around bugs in people’s setups”