Cluster cols and rows of stacked violin

[chsher]

• Additional function parameters / changed functionality / changed defaults?

Could you add functionality to allow for clustering of both the columns and the rows of the stacked violin plot (e.g., dendrogram_col = True, dendrogram_row = True), similar to what pheatmap does for heatmaps in R?

[ivirshup]

For heatmaps, the clustering is done on the values of the heatmap's cells. What values would be used for clustering the violin plots?

[fidelram]

If I understand correctly, for the violin plots and in general for any plot, the idea would be to order the genes according to a hierarchical clustering. Actually, the computation of a dendrogram for the genes is not too difficult, what is not so easy is to accomodate a dendrogram on the figures. That requires lot of changes to the code.

Maybe just ordering the genes would be useful?

[chsher]

Agreed, thank you, an ordering of the genes would be useful.

[SalmonellaIIB]

I would like to ask how I can order the genes if they have different expression in each cluster? Should I order the genes based in overall expression?