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chore: use scverse-misc’s @deprecated#4096

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flying-sheep merged 35 commits intomainfrom
pa/misc-deprecation
May 7, 2026
Merged

chore: use scverse-misc’s @deprecated#4096
flying-sheep merged 35 commits intomainfrom
pa/misc-deprecation

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@flying-sheep flying-sheep commented Apr 28, 2026

  • Closes #
  • Tests included or not required because:
  • Release notes not necessary because: only backend / minor docs changes

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codecov Bot commented Apr 28, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 79.59%. Comparing base (396b665) to head (120aa9d).
✅ All tests successful. No failed tests found.

Additional details and impacted files
@@            Coverage Diff             @@
##             main    #4096      +/-   ##
==========================================
- Coverage   79.60%   79.59%   -0.02%     
==========================================
  Files         119      119              
  Lines       12778    12774       -4     
==========================================
- Hits        10172    10167       -5     
- Misses       2606     2607       +1     
Flag Coverage Δ
hatch-test.low-vers 78.87% <100.00%> (+0.01%) ⬆️
hatch-test.pre 79.45% <100.00%> (-0.01%) ⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files with missing lines Coverage Δ
src/scanpy/_compat.py 85.71% <100.00%> (-1.33%) ⬇️
src/scanpy/_settings/__init__.py 91.72% <100.00%> (+0.06%) ⬆️
src/scanpy/_settings/verbosity.py 81.57% <100.00%> (+0.49%) ⬆️
src/scanpy/datasets/_datasets.py 92.02% <100.00%> (+0.05%) ⬆️
src/scanpy/external/pl.py 29.21% <100.00%> (-0.79%) ⬇️
src/scanpy/external/pp/__init__.py 100.00% <100.00%> (ø)
src/scanpy/logging.py 97.29% <100.00%> (ø)
src/scanpy/plotting/__init__.py 100.00% <100.00%> (ø)
src/scanpy/plotting/_tools/scatterplots.py 83.41% <100.00%> (ø)
src/scanpy/readwrite.py 81.27% <100.00%> (+0.04%) ⬆️
... and 1 more

... and 1 file with indirect coverage changes

@flying-sheep flying-sheep requested a review from ilan-gold May 7, 2026 09:16
@flying-sheep flying-sheep changed the base branch from main to pa/settings May 7, 2026 11:17
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Failing CI but the code looks right!

Base automatically changed from pa/settings to main May 7, 2026 15:22
@flying-sheep flying-sheep modified the milestone: 1.12.2 May 7, 2026
@flying-sheep flying-sheep merged commit 4932cb5 into main May 7, 2026
17 of 20 checks passed
@flying-sheep flying-sheep deleted the pa/misc-deprecation branch May 7, 2026 15:40
@scverse scverse deleted a comment from lumberbot-app Bot May 7, 2026
flying-sheep added a commit that referenced this pull request May 7, 2026
Co-authored-by: Ilan Gold <ilanbassgold@gmail.com>
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2 participants