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update for zarrv3 branch #324

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Merged
merged 1 commit into from
Sep 13, 2025
Merged

update for zarrv3 branch #324

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2 changes: 1 addition & 1 deletion src/spatialdata_io/converters/legacy_anndata.py
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Original file line number Diff line number Diff line change
Expand Up @@ -350,4 +350,4 @@ def from_legacy_anndata(adata: AnnData) -> SpatialData:
new_table = TableModel.parse(new_table, region=REGION, region_key=REGION_KEY, instance_key=INSTANCE_KEY)
else:
new_table = adata.copy()
return SpatialData(table=new_table, images=images, shapes=shapes)
return SpatialData(tables={"table": new_table}, images=images, shapes=shapes)
6 changes: 3 additions & 3 deletions tests/converters/test_legacy_anndata.py
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Expand Up @@ -26,8 +26,8 @@ def blobs_annotating_element(name: BlobsTypes) -> SpatialData:
n = len(instance_id)
new_table = AnnData(shape=(n, 0), obs={"region": [name for _ in range(n)], "instance_id": instance_id})
new_table = TableModel.parse(new_table, region=name, region_key="region", instance_key="instance_id")
del sdata.table
sdata.table = new_table
del sdata["table"]
sdata["table"] = new_table
return sdata


Expand Down Expand Up @@ -67,7 +67,7 @@ def idempotency_check_from_anndata(adata0: SpatialData, include_images: bool) ->

@pytest.mark.parametrize("name", ["blobs_labels", "blobs_circles", "blobs_polygons", "blobs_multipolygons"])
@pytest.mark.parametrize("include_images", [False, True])
def test_bidectional_convesion(name: BlobsTypes, include_images: bool) -> None:
def test_bidirectional_conversion(name: BlobsTypes, include_images: bool) -> None:
if include_images:
pytest.skip(
"include_images=True can't be tested because the bug "
Expand Down
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