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Oct 27, 2025
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Add visium hd test datasets #336

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12 changes: 11 additions & 1 deletion .github/workflows/prepare_test_data.yaml
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Expand Up @@ -21,7 +21,8 @@ jobs:
mkdir -p ./data
cd ./data

# the datasets are licensed as CC BY 4.0, as shown here
# -------
# the Xenium datasets are licensed as CC BY 4.0, as shown here
# https://www.10xgenomics.com/support/software/xenium-onboard-analysis/latest/resources/xenium-example-data

# 10x Genomics Xenium 2.0.0
Expand All @@ -44,6 +45,15 @@ jobs:
# 10x Genomics Xenium 4.0.0 (v1+Protein) Human kidney, multimodal cell segmentation
curl -O https://cf.10xgenomics.com/samples/xenium/4.0.0/Xenium_V1_Protein_Human_Kidney_tiny/Xenium_V1_Protein_Human_Kidney_tiny_outs.zip

# -------
# the Visium HD dataset is licensed as CC BY 4.0, as shown here
# https://www.10xgenomics.com/support/software/space-ranger/latest/resources/visium-hd-example-data

# 10x Genomics Visium HD 4.0.1 3' Mouse Brain
curl -O https://cf.10xgenomics.com/samples/spatial-exp/4.0.1/Visium_HD_Tiny_3prime_Dataset/Visium_HD_Tiny_3prime_Dataset_outs.zip

# -------
# we received written permission to make the following dataset public and integrate it in the CI system of spatialdata-io
# Spatial Genomics seqFISH v2
curl -O https://s3.embl.de/spatialdata/raw_data/seqfish-2-test-dataset.zip

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