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specship uninstall now removes SpecShip completely. It used to only unwire SpecShip from Claude Code, leaving the CLI, your indexes, and your ~/.specship data behind. It now also deletes the current project's index, the user-level ~/.specship directory (including any saved JIRA credentials and worktrees), and the specship program itself — returning the machine to its pre-install state. It first shows exactly what will be deleted and asks for confirmation (--yes / --force skips the prompt). To keep the old wiring-only behavior, run specship uninstall --keep-data. Indexes in other projects aren't auto-discovered (SpecShip keeps no registry of them), so it says so rather than implying a machine-wide sweep.
