Improve pipeline icon upload instructions to include order of priority

changelog/seqera-enterprise/v25.1.md

@@ -28,7 +28,10 @@ Studios is Seqera's in-platform tool for secure, on-demand, interactive data ana
 - Audit log update: Pipeline edit events are now logged.
 - Switch AWS Batch compute environment dependencies to AWS SDK v2.
 - Switch Compute dependencies to AWS SDK v2.
-- You can now upload custom icons when adding or updating a GitHub pipeline. If no user-uploaded icon is defined, the icon defined in the `manifest.icon` Nextflow config field is used by default. Otherwise, the GitHub organization avatar is used.
+- You can upload custom icons when adding or updating a pipeline. If no user-uploaded icon is defined, Platform will retrieve and attach a pipeline icon in the following order of precedence:
+    1. A valid `icon` key:value pair defined in the `manifest` object of the `nextflow.config` file.
+    2. The GitHub organization avatar (if the repository is hosted on GitHub).
+    3. If none of the above are defined, Platform auto-generates and attaches a pipeline icon.
 - New dynamic page title for easy bookmarking.
 - Added `totalProcesses` to workflow progress responses.
 - Implement collapsible view for JSON workflow parameters tab and add **View as YAML** option.

platform-cloud/docs/getting-started/quickstart-demo/add-pipelines.md

@@ -44,10 +44,16 @@ To launch pipelines directly with CLI tools, select the **Launch Pipeline** tab
 
 From your workspace Launchpad, select **Add Pipeline** and specify the following pipeline details:
 
-- (*Optional*) **Image**: Select the **Edit** icon on the pipeline image to open the **Edit image** window. From here, select **Upload file** to browse for an image file, or drag and drop the image file directly. Images must be in JPG or PNG format, with a maximum file size of 200 KB.
+- Optional: **Image**: Select the **Edit** icon on the pipeline image to open the **Edit image** window. From here, select **Upload file** to browse for an image file, or drag and drop the image file directly. Images must be in JPG or PNG format, with a maximum file size of 200 KB.
+    :::note
+    You can upload custom icons when adding or updating a pipeline. If no user-uploaded icon is defined, Platform will retrieve and attach a pipeline icon in the following order of precedence:
+      1. A valid `icon` key:value pair defined in the `manifest` object of the `nextflow.config` file.
+      2. The GitHub organization avatar (if the repository is hosted on GitHub).
+    3. If none of the above are defined, Platform auto-generates and attaches a pipeline icon.
+    :::
 - **Name**: A custom name of your choice. Pipeline names must be unique per workspace. 
-- (*Optional*) **Description**: A summary of the pipeline or any information that may be useful to workspace participants when selecting a pipeline to launch. 
-- (*Optional*) **Labels**: Categorize the pipeline according to arbitrary criteria (such research group or reference genome version) that may help workspace participants to select the appropriate pipeline for their analysis.
+- Optional: **Description**: A summary of the pipeline or any information that may be useful to workspace participants when selecting a pipeline to launch. 
+- Optional: **Labels**: Categorize the pipeline according to arbitrary criteria (such research group or reference genome version) that may help workspace participants to select the appropriate pipeline for their analysis.
 - **Compute environment**: Select an existing workspace [compute environment](../../compute-envs/overview).
 - **Pipeline to launch**: The URL of any public or private Git repository that contains Nextflow source code.
 - **Revision number**: Platform will search all of the available tags and branches in the provided pipeline repository and render a dropdown to select the appropriate version. 

platform-enterprise_versioned_docs/version-24.1/getting-started/quickstart-demo/add-data.mdx → platform-enterprise_versioned_docs/version-24.1/getting-started/quickstart-demo/add-data.md

@@ -5,9 +5,6 @@ date: "21 Jul 2024"
 tags: [platform, data, data explorer, datasets]
 ---
 
-import Tabs from '@theme/Tabs';
-import TabItem from '@theme/TabItem';
-
 Most bioinformatics pipelines require an input of some sort. This is typically a samplesheet where each row consists of a sample, the location of files for that sample (such as FASTQ files), and other sample details. Reliable shared access to pipeline input data is crucial to simplify data management, minimize user data-input errors, and facilitate reproducible workflows.
 
 In Platform, samplesheets and other data can be made easily accessible in one of two ways: 
@@ -58,12 +55,12 @@ In Data Explorer, you can:
     ![Bucket details](assets/data-explorer-view-details.gif)
 
   - **View bucket contents**:
-    Select a bucket name from the list to view the bucket contents. The file type, size, and path of objects are displayed in columns next to the object name. For example, view the outputs of your [nf-core/rnaseq](./comm-showcase#launch-the-nf-corernaseq-pipeline) run:
+    Select a bucket name from the list to view the bucket contents. The file type, size, and path of objects are displayed in columns next to the object name. For example, view the outputs of an *nf-core/rnaseq* run:
 
     ![Data Explorer bucket](assets/sp-cloud-data-explorer.gif)
 
    - **Preview files**: 
-    Select a file to open a preview window that includes a **Download** button. For example, view the resultant gene counts of the salmon quantification step of your [nf-core/rnaseq](./comm-showcase#launch-the-nf-corernaseq-pipeline) run:
+    Select a file to open a preview window that includes a **Download** button. For example, view the resultant gene counts of the salmon quantification step of an *nf-core/rnaseq* run:
 
     ![Preview pipeline results](assets/data-explorer-preview-files.gif)
 

platform-enterprise_versioned_docs/version-24.1/getting-started/quickstart-demo/add-pipelines.mdx → platform-enterprise_versioned_docs/version-24.1/getting-started/quickstart-demo/add-pipelines.md

@@ -5,9 +5,6 @@ date: "12 Jul 2024"
 tags: [platform, launch, pipelines, launchpad]
 ---
 
-import Tabs from '@theme/Tabs';
-import TabItem from '@theme/TabItem';
-
 The Launchpad lists the preconfigured Nextflow pipelines that can be executed on the [compute environments](../../compute-envs/overview) in your workspace. 
 
 Platform offers two methods to import pipelines to your workspace Launchpad — directly from Seqera Pipelines or manually via **Add pipeline** in Platform.

platform-enterprise_versioned_docs/version-24.1/getting-started/quickstart-demo/automation.mdx → platform-enterprise_versioned_docs/version-24.1/getting-started/quickstart-demo/automation.md

@@ -5,9 +5,6 @@ date: "21 Jul 2024"
 tags: [platform, automation, api, cli, seqerakit]
 ---
 
-import Tabs from '@theme/Tabs';
-import TabItem from '@theme/TabItem';
-
 Seqera Platform provides multiple methods of programmatic interaction to automate the execution of pipelines, chain pipelines together, and integrate Platform with third-party services.
 
 ### Platform API