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Added root ixf doctor --json dependency diagnostics under dependencies.mermaid, dependencies.messenger, and dependencies.update for full-function readiness checks.
Added ixf setup deps dry-run/apply support for optional Mermaid rendering dependencies, with explicit npm/npx commands and no silent desktop environment changes.
Documented the full dependency matrix, including Go-only core runtime, cookie export platform dependencies, Mermaid CLI/Puppeteer, Messenger Chrome/Chromium, and GitHub Release access.