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v0.4.0
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katosh
released this
03 Jun 20:57
StringDBReport class for gene set visualization and reporting
make sure da directions categories are always retained and ordered correctly
more flexible volcano_de plot
fold_change_mode parameter for heatmap to only show fold-change instead of split tiles
implement RunInfo utility to fetch information about previous runs
bugfix passing ax to kompot.plot.embedding
implemented mgroups in kompot.plot.embedding to plot multiple groupings
implement group-wise differential expression through groups parameter in kompot.compute_differential_expression
also return and store uncertainty estimates (stds) in de analysis
also return and store z-scores in de analysis
implement underrepresentation filtering for de analaysis
plot.embedding scanpy wrapper can now plot multiple layer
make sure modified anndata is writable (use JSON for run info in .uns)
option to store posterior covariance matrix in differential expression anndata function
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