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v0.4.0

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@katosh katosh released this 03 Jun 20:57
  • StringDBReport class for gene set visualization and reporting
  • make sure da directions categories are always retained and ordered correctly
  • more flexible volcano_de plot
  • fold_change_mode parameter for heatmap to only show fold-change instead of split tiles
  • implement RunInfo utility to fetch information about previous runs
  • bugfix passing ax to kompot.plot.embedding
  • implemented mgroups in kompot.plot.embedding to plot multiple groupings
  • implement group-wise differential expression through groups parameter in kompot.compute_differential_expression
  • also return and store uncertainty estimates (stds) in de analysis
  • also return and store z-scores in de analysis
  • implement underrepresentation filtering for de analaysis
  • plot.embedding scanpy wrapper can now plot multiple layer
  • make sure modified anndata is writable (use JSON for run info in .uns)
  • option to store posterior covariance matrix in differential expression anndata function