Wrapping htslib#79

Merged

masarunakajima merged 20 commits intomasterfrom

wrapping_htslib

Jul 28, 2023

Commits on Jul 27, 2023

Adding some files with helper code to interface between the htslib and the c++
andrewdavidsmith
committed
Adding dependency on bamxx files for testing modifications to dnmtools
andrewdavidsmith
committed
format-reads: setup for using the bamxx sources
andrewdavidsmith
committed
bug in dnmt_error.hpp: is is using ostringstream but not including the necessary header
andrewdavidsmith
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Building libbamxx.a as a library because it seems more convenient for now
andrewdavidsmith
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Adding all the includes from bamxx so that apps won't need to
andrewdavidsmith
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Move changes to remove direct use of htslib functions
andrewdavidsmith
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Updated uniq.cpp to remove the direct use of htslib functions
andrewdavidsmith
committed
Adding a check for the input file existing before attempting to deduce if it is a mapped reads file
andrewdavidsmith
committed

Commits on Jul 28, 2023