feat(init): auto-populate ignore patterns from detected ecosystem#53
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The `unresolved_edges` count conflated two very different things: 1. External imports — `fastapi`, `os`, `react`. Static analysis without a venv/site-packages parse can't resolve these and isn't supposed to. These are expected, not errors. 2. Local-unresolved — target's root module IS in the repo but the specific symbol couldn't be matched (rename drift, dynamic import, missed binding). These are the actionable ones. `compute_metrics` now classifies each unresolved edge by checking whether the target's root module appears as a MODULE node's qualname-root in the graph. New fields: `external_edges`, `unresolved_local_edges`. The `unresolved_edges` total is kept as the sum for back-compat. Surfaced + exposed in the markdown report and the MCP `metrics` tool. v0.1.2 backlog item #2.
FastAPI Pydantic request-body models were being flagged dead because the only reference to them came through a handler's parameter type annotation, which the Python parser didn't trace. The parser now walks each function's parameter `type` strings and the return-type string, regex-extracts capitalized identifiers, drops typing-scaffolding (`Optional`, `Annotated`, `Union`, ...) and FastAPI dependency markers (`Body`, `Depends`, ...), and emits one `CALLS` edge with `dst="unresolved::<TypeName>"` and `metadata.via == "annotation"` per surviving name. The existing resolver rewrites these to real `CLASS` ids when the type is in-repo, which closes the loop for dead-code detection. Framework-agnostic: every function with type annotations benefits, not just route handlers. The change reuses `EdgeKind.CALLS` (rather than introducing a new `REFERENCES` kind) because `CALLS` already flows through the resolver and the reference-kind whitelist used by dead-code, and Pydantic-body validation IS effectively a runtime call into the model class. v0.1.2 backlog item #3.
Coding agents (Claude Code, Cursor, Codex) defaulted to grep even with polycodegraph's MCP server registered, because they had no hint that the MCP tools existed. `codegraph init` now prompts (default yes) and writes a `## polycodegraph` section telling the agent which MCP tool maps to each kind of structural query. Mirrors the `.mcp.json` behaviour: creates fresh, appends when missing, leaves alone when the section is already there. Both CLAUDE.md and AGENTS.md are written. v0.1.2 backlog item #4.
The "Extra ignore patterns" free-text prompt was a footgun — a user typed `y` thinking it was yes/no and got `ignore: [- y]` in their YAML. Init now sniffs the repo for `pyproject.toml`, `package.json` (with React Native detection via dependencies/devDependencies), `go.mod`, `Cargo.toml`, `pom.xml`, `build.gradle`, and pre-fills the matching ignore patterns. The user confirms with a single yes/no. Extras prompt remains for project-specific paths. New module: `codegraph/init_presets.py` with `detect_ignore_presets`. Patterns auto + extras get de-duplicated in insertion order. v0.1.2 backlog item #5.
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Summary
v0.1.2 backlog item #5.
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