ScreenSEQ v2.1.0 - Enhanced Count Processing

ScreenSEQ v2.1.0 Release

🚀 New Features & Enhancements

Count Processing Improvements

• Enhanced data handling: Switched from right_join to left_join in R count processing scripts for better data integrity
• Debug output: Added generation of debug CSV files with top 10K sequences ranked by total counts
• New statistics metric: Added PCT.Processed metric showing percentage of processed reads

Data Quality & Analysis

• Improved filtering: Better separation of library and non-library sequences in processing
• Standardized file naming: Consistent project tag extraction for reliable output file naming
• Enhanced statistics table: Added processing percentage calculations for quality assessment

Documentation Updates

• Comprehensive documentation refresh with updated version references
• Enhanced results documentation with new PCT.Processed column descriptions
• Updated README with version information and current release date

🔧 Technical Improvements

• Better data handling in joinCounts.R and joinCountsR1R2.R
• Improved count processing logic for more accurate results
• Enhanced quality control metrics for better pipeline monitoring

📚 Documentation

• Updated all documentation to v2.1.0
• Added comprehensive changelog with detailed feature descriptions
• Enhanced results documentation for both full and summary formats

🏷️ Version Info

• Release Date: 2025-08-31
• Base Branch: master
• Previous Version: v2.0.0

For technical details and complete changelog, see CHANGELOG.md.