2.2.0

2.2.0

Feat

• Breaking: Make reference name a parameter so reads mapping to references other than M. tuberculosis can be output if needed

Chores

• Split the minimap2 and the analysis steps into separate python scripts
• manifest_builder params relabelled to remove gtdb as can use any db
• support supplying multiple dbs to manifest building

Tests

• Tests for reference name as a parameter, and for flu specifically