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INDRA v1.3.0

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@bgyori bgyori released this 14 Oct 17:16
v1.3.0
f51732c

New features:

  • Python 3 support in addition to maintaining compatibility with Python 2
  • Universal handling of unicode within INDRA
  • Bioentities added as a submodule as a basis for entity hierarchies (for protein family and complex relationships)
  • Resources for performing high-throughput literature reading (indra.tools.reading) with Amazon cluster support
  • Belief Engine (indra.belief) applies belief propagation based on evidence from multiple sources to score the believability of INDRA Statements
  • Grounding Mapper (indra.preassembler.grounding_mapper) fixes named entity grounding to databases based on a use case specific mapping table
  • New output assemblers added: SIF assembler (indra.assemblers.sif_assembler), Index Card assembler (indra.assemblers.index_card_assembler)
  • Index Card processor as an input source (indra.index_cards)
  • Several benchmarks are now available in indra.benchmarks
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